accessor and replacement methods for FLCore classes
accessors
name,
name<-
name<-<-
desc
desc<-
range<-
units<-
catch
catch<-
catch.n
desc
desc<-
catch.wt
catch.wt<-
discards
discards<-
discards.n
discards.n<-
discards.wt
discards.wt<-
landings
landings<-
landings.n
landings.n<-
landings.wt
landings.wt<-
m
m<-
stock
stock<-
stock.n
stock.n<-
stock.wt
stock.wt<-
m.spwn
m.spwn<-
harvest
harvest<-
harvest.spwn
harvest.spwn<-
mat
mat<-
n
n<-
m
m<-
wt
wt<-
fec
fec<-
spwn
spwn<-
effort
effort<-
type
type<-
distr
distr<-
distribution
distribution<-
index
index<-
index.var
index.var<-
catch.n
catch.n<-
catch.wt
catch.wt<-
sel.pattern
sel.pattern<-
index.q
index.q<-
model
model<-
logl
logl<-
gr
gr<-
initial
initial<-
logLik
logLik<-
vcov<-
vcov
hessian
hessian<-
logerror
logerror<-
details
details<-
residuals
residuals<-
fitted
fitted<-
rec
rec<-
rec.obs
rec.obs<-
catch.q
catch.q<-
discards.sel
discards.sel<-
landings.sel
landings.sel<-
params
params,
params<-
params<-<-
Short aliases for most FLCore classes construction methods
apply method for FLCore classes
apply,FLArray,numeric,function-method
apply,FLPar,ANY,ANY-method
apply,FLQuantJK,numeric,function-method
apply,FLParJK,numeric,function-method
Arithmetic operators for FLCore classes
Arith,numeric,FLArray-method
Arith,FLArray,numeric-method
Arith,FLArray,FLArray-method
Arith,FLPar,FLPar-method
Arith,FLArray,FLPar-method
Arith,FLPar,FLArray-method
Bias of estimates through jackknife
bubbles
bubbles-methods
bubbles,formula,FLQuant-method
bubbles,formula,data.frame-method
bubbles,formula,FLCohort-method
bubbles,formula,FLQuants-method
Convert Objects Between Classes
coerce-methods
coerce-methods
coerce,FLArray,data.frame-method
coerce-methods
coerce,FLPar,data.frame-method
coerce-methods
coerce,data.frame,FLQuant-method
coerce-methods
coerce,FLBiol,FLStock-method
compute
computeLandings
computeLandings-methods
computeDiscards
computeDiscards-methods
computeCatch
computeLandings
computeCatch-methods
computeStock
computeStock-methods
computeLandings,FLS-method
computeLandings,FLStock-method
computeLandings,FLStockLen-method
computeDiscards,FLS-method
computeDiscards,FLStock-method
computeCatch,FLS-method
computeCatch,FLStock-method
computeCatch,FLStockLen-method
computeStock,FLS-method
computeStock,FLStock-method
computeStock,FLStockLen-method
Create accesor methods for a given class
dimSummaries
quantSums
quantSums-methods
quantSums,FLQuant-method
yearSums
unitSums
seasonSums
areaSums
iterSums
dimSums
quantMeans
yearMeans
unitMeans
seasonMeans
areaMeans
iterMeans
dimMeans
quantVars
yearVars
unitVars
seasonVars
areaVars
iterVars
dimVars
iterMedians
iterCVs
quantSums,FLQuant-method
yearSums,FLQuant-method
unitSums,FLQuant-method
seasonSums,FLQuant-method
areaSums,FLQuant-method
iterSums,FLQuant-method
quantMeans,FLQuant-method
yearMeans,FLQuant-method
unitMeans,FLQuant-method
seasonMeans,FLQuant-method
areaMeans,FLQuant-method
iterMeans,FLQuant-method
iterMedians,FLQuant-method
quantVars,FLQuant-method
yearVars,FLQuant-method
unitVars,FLQuant-method
seasonVars,FLQuant-method
areaVars,FLQuant-method
iterVars,FLQuant-method
iterCVs,FLQuant-method
yearSums,FLQuantDistr-method
unitSums,FLQuantDistr-method
seasonSums,FLQuantDistr-method
areaSums,FLQuantDistr-method
yearMeans,FLQuantDistr-method
unitMeans,FLQuantDistr-method
seasonMeans,FLQuantDistr-method
areaMeans,FLQuantDistr-method
iterMeans,FLQuantDistr-method
iterMedians,FLQuantDistr-method
quantVars,FLQuantDistr-method
yearVars,FLQuantDistr-method
unitVars,FLQuantDistr-method
seasonVars,FLQuantDistr-method
areaVars,FLQuantDistr-method
iterVars,FLQuantDistr-method
iterMeans,FLPar-method
iterMedians,FLPar-method
iterVars,FLPar-method
iterSums,FLPar-method
Evaluates a predictModel slot inside the object cointaining it
Extract
[,FLArray,ANY,ANY,ANY-method
[,FLArray,array,missing,missing-method
[<-,FLArray,ANY,ANY,ANY-method
`[<-,FLArray,ANY,ANY,ANY-method`
[<-,FLArray,ANY,ANY,FLArray-method
`[<-,FLArray,ANY,ANY,FLArray-method`
$,FLQuant-method
[,FLQuantDistr,ANY,ANY,ANY-method
[,FLQuantDistr,array,missing,missing-method
[,FLPar,ANY,ANY,ANY-method
[,FLPar,array,missing,missing-method
[<-,FLPar,ANY,ANY,ANY-method
$,FLPar-method
[,FLComp,ANY,ANY,ANY-method
[<-,FLComp,ANY,ANY,ANY-method
[,FLStock,ANY,ANY,ANY-method
[<-,FLStock,ANY,ANY,FLStock-method
[,FLI,ANY,ANY,ANY-method
[,predictModel,ANY,missing,ANY-method
[[<-,FLlst,ANY,missing-method
[[<-,FLlst,ANY,missing,ANY-method
$<-,FLlst-method
$<-,FLlst,ANY-method
[<-,FLlst,ANY,missing,ANY-method
[,FLlst,ANY,missing,ANY-method
FLBiol
FLBiol-methods
FLBiol
FLBiol-class
n,FLBiol-method
m,FLBiol-method
wt,FLBiol-method
fec,FLBiol-method
spwn,FLBiol-method
name,FLBiol-method
desc,FLBiol-method
range,FLBiol-method
n<-,FLBiol,FLQuant-method
m<-,FLBiol,FLQuant-method
wt<-,FLBiol,FLQuant-method
fec<-,FLBiol,FLQuant-method
spwn<-,FLBiol,FLQuant-method
name<-,FLBiol,character-method
desc<-,FLBiol,character-method
range<-,FLBiol,numeric-method
FLBiolcpp-class
FLBiol,FLQuant-method
FLBiol,missing-method
FLBiolcpp-class
FLBiols
FLBiols-methods
FLBiols
FLBiols-class
FLBiols,FLBiol-method
FLBiols,missing-method
FLBiols,list-method
FLCohort
FLCohort-methods
FLCohort
FLCohort-class
FLCohort-methods
FLCohort,FLQuant-method
FLCohort,FLCohort-method
FLCohort,array-method
FLCohort,vector-method
FLCohort,missing-method
FLCohorts
FLCohorts-methods
FLCohorts
FLCohorts-class
FLCohorts-methods
FLCohorts,ANY-method
FLCohorts,missing-method
FLCohorts,list-method
FLCohorts,FLCohorts-method
FLIndexBiomass
FLIndexBiomass-methods
FLIndexBiomass
FLIndexBiomass-class
catch.n,FLIndexBiomass-method
catch.wt,FLIndexBiomass-method
desc,FLIndexBiomass-method
distribution,FLIndexBiomass-method
effort,FLIndexBiomass-method
index,FLIndexBiomass-method
index.q,FLIndexBiomass-method
index.var,FLIndexBiomass-method
name,FLIndexBiomass-method
range,FLIndexBiomass-method
sel.pattern,FLIndexBiomass-method
catch.n<-,FLIndexBiomass,FLQuant-method
catch.n<-,FLIndexBiomass,numeric-method
catch.wt<-,FLIndexBiomass,FLQuant-method
catch.wt<-,FLIndexBiomass,numeric-method
desc<-,FLIndexBiomass,character-method
distribution<-,FLIndexBiomass,character-method
effort<-,FLIndexBiomass,FLQuant-method
index<-,FLIndexBiomass,FLQuant-method
index<-,FLIndexBiomass,numeric-method
index.q<-,FLIndexBiomass,FLQuant-method
index.q<-,FLIndexBiomass,numeric-method
index.var<-,FLIndexBiomass,FLQuant-method
index.var<-,FLIndexBiomass,numeric-method
name<-,FLIndexBiomass,character-method
range<-,FLIndexBiomass,numeric-method
sel.pattern<-,FLIndexBiomass,FLQuant-method
sel.pattern<-,FLIndexBiomass,numeric-method
FLIndexBiomass,FLQuant-method
FLIndexBiomass,missing-method
FLIndex
FLIndex-methods
FLIndex
FLIndex-class
catch.n,FLIndex-method
catch.wt,FLIndex-method
desc,FLIndex-method
distribution,FLIndex-method
effort,FLIndex-method
index,FLIndex-method
index.q,FLIndex-method
index.var,FLIndex-method
name,FLIndex-method
range,FLIndex-method
sel.pattern,FLIndex-method
type,FLIndex-method
catch.n<-,FLIndex,FLQuant-method
catch.n<-,FLIndex,numeric-method
catch.wt<-,FLIndex,FLQuant-method
catch.wt<-,FLIndex,numeric-method
desc<-,FLIndex,character-method
distribution<-,FLIndex,character-method
effort<-,FLIndex,FLQuant-method
index<-,FLIndex,FLQuant-method
index<-,FLIndex,numeric-method
index.q<-,FLIndex,FLQuant-method
index.q<-,FLIndex,numeric-method
index.var<-,FLIndex,FLQuant-method
index.var<-,FLIndex,numeric-method
name<-,FLIndex,character-method
range<-,FLIndex,numeric-method
sel.pattern<-,FLIndex,FLQuant-method
sel.pattern<-,FLIndex,numeric-method
type<-,FLIndex,character-method
FLIndex,FLQuant-method
FLIndex,missing-method
FLIndices
FLIndices-methods
FLIndices
FLIndices-class
FLIndices,FLI-method
FLIndices,missing-method
FLIndices,list-method
FLlst
FLlst-methods
FLlst
FLlst-class
FLlst-methods
FLlst,ANY-method
FLlst,missing-method
FLlst,list-method
FLModel
FLModel-methods
FLModel
FLModel-class
FLModel-methods
FLModel,formula-method
FLModel,missing-method
FLModel,character-method
FLModel,function-method
FLModelSim
FLModelSim-methods
FLModelSim
FLModelSim-class
FLModelSim-methods
FLModelSim,formula-method
FLModelSim,missing-method
FLModelSim,character-method
FLModelSim,function-method
FLModelSim,missing-method
FLModelSims
FLModelSims-class
FLModelSims-methods
FLModelSims
FLModelSims,ANY-method
FLModelSims,missing-method
FLModelSims,list-method
FLModelSims,FLModelSims-method
FLPar
FLPar-methods
FLPar
FLPar-class
FLPar-methods
FLPar,array-method
FLPar,missing-method
FLPar,vector-method
FLPar,FLPar-method
FLPars
FLPars-methods
FLPars
FLPars-class
FLPars-methods
FLPars,ANY-method
FLPars,missing-method
FLPars,list-method
FLPars,FLPars-method
A class for samples of a probability distribution
FLQuantDistr
FLQuantDistr-methods
FLQuantDistr
FLQuantDistr-class
FLQuantDistr,ANY,ANY-method
FLQuantDistr,FLQuant,FLQuant-method
A class for jackknifing fisheries data
FLQuantPoint
FLQuantPoint-methods
FLQuantPoint
FLQuantPoint-class
FLQuantPoint-methods
FLQuantPoint,FLQuant-method
mean,FLQuantPoint-method
mean<-,FLQuantPoint,FLQuant-method
median,FLQuantPoint-method
median<-,FLQuantPoint,FLQuant-method
var,FLQuantPoint-method
var<-,FLQuantPoint,FLQuant-method
lowq,FLQuantPoint-method
lowq<-,FLQuantPoint,FLQuant-method
uppq,FLQuantPoint-method
uppq<-,FLQuantPoint,FLQuant-method
quantile,FLQuantPoint-method
FLQuantPoint,missing-method
FLQuantPoint,FLQuant-method
FLQuant class for numerical data
FLQuant
FLQuant-methods
FLQuant
FLQuant-class
FLQuant-methods
FLQuant,FLQuant-method
FLQuant,missing-method
FLQuant,vector-method
FLQuant,array-method
FLQuant,matrix-method
FLQuant,FLQuant-method
FLQuants
FLQuants-methods
FLQuants
FLQuants-class
FLQuants,ANY-method
FLQuants,FLComp-method
FLQuants,missing-method
FLQuants,list-method
FLQuants,FLQuants-method
FLSR
FLSR-methods
FLSR
FLSR-class
covar,FLSR-method
desc,FLSR-method
details,FLSR-method
distribution,FLSR-method
fitted,FLSR-method
gr,FLSR-method
hessian,FLSR-method
initial,FLSR-method
logl,FLSR-method
logLik,FLSR-method
model,FLSR-method
name,FLSR-method
params,FLSR-method
range,FLSR-method
rec,FLSR-method
residuals,FLSR-method
ssb,FLSR-method
vcov,FLSR-method
covar<-,FLSR,FLQuants-method
desc<-,FLSR,character-method
details<-,FLSR,list-method
distribution<-,FLSR,character-method
distribution<-,FLSR,factor-method
fitted<-,FLSR,FLArray-method
fitted<-,FLSR,numeric-method
gr<-,FLSR,function-method
hessian<-,FLSR,array-method
initial<-,FLSR,function-method
logl<-,FLSR,function-method
logLik<-,FLSR,logLik-method
logLik<-,FLSR,numeric-method
model<-,FLSR,character-method
model<-,FLSR,formula-method
model<-,FLSR,function-method
model<-,FLSR,list-method
name<-,FLSR,character-method
params<-,FLSR,FLPar-method
range<-,FLSR,numeric-method
rec<-,FLSR,FLQuant-method
rec<-,FLSR,numeric-method
residuals<-,FLSR,FLArray-method
residuals<-,FLSR,numeric-method
ssb<-,FLSR,FLQuant-method
ssb<-,FLSR,numeric-method
vcov<-,FLSR,array-method
FLSR,ANY-method
FLSR,missing-method
FLSRs
FLSRs-methods
FLSRs
FLSRs-class
FLSRs,ANY-method
FLSRs,missing-method
FLSRs,list-method
FLSRs,FLSR-method
FLSRs,missing-method
FLSRs,list-method
FLStockLen
FLStockLen-methods
FLStockLen
FLStockLen-class
catch,FLStockLen-method
catch.n,FLStockLen-method
catch.wt,FLStockLen-method
desc,FLStockLen-method
discards,FLStockLen-method
discards.n,FLStockLen-method
discards.wt,FLStockLen-method
halfwidth,FLStockLen-method
harvest,FLStockLen-method
harvest.spwn,FLStockLen-method
landings,FLStockLen-method
landings.n,FLStockLen-method
landings.wt,FLStockLen-method
mat,FLStockLen-method
m,FLStockLen-method
m.spwn,FLStockLen-method
name,FLStockLen-method
range,FLStockLen-method
stock,FLStockLen-method
stock.n,FLStockLen-method
stock.wt,FLStockLen-method
catch<-,FLStockLen,FLQuant-method
catch<-,FLStockLen,numeric-method
catch.n<-,FLStockLen,FLQuant-method
catch.n<-,FLStockLen,numeric-method
catch.wt<-,FLStockLen,FLQuant-method
catch.wt<-,FLStockLen,numeric-method
desc<-,FLStockLen,character-method
discards<-,FLStockLen,FLQuant-method
discards<-,FLStockLen,numeric-method
discards.n<-,FLStockLen,FLQuant-method
discards.n<-,FLStockLen,numeric-method
discards.wt<-,FLStockLen,FLQuant-method
discards.wt<-,FLStockLen,numeric-method
halfwidth<-,FLStockLen,-method
harvest<-,FLStockLen,character-method
harvest<-,FLStockLen,FLQuant-method
harvest<-,FLStockLen,numeric-method
harvest.spwn<-,FLStockLen,FLQuant-method
harvest.spwn<-,FLStockLen,numeric-method
landings<-,FLStockLen,FLQuant-method
landings<-,FLStockLen,numeric-method
landings.n<-,FLStockLen,FLQuant-method
landings.n<-,FLStockLen,numeric-method
landings.wt<-,FLStockLen,FLQuant-method
landings.wt<-,FLStockLen,numeric-method
mat<-,FLStockLen,FLQuant-method
mat<-,FLStockLen,numeric-method
m<-,FLStockLen,FLQuant-method
m<-,FLStockLen,numeric-method
m.spwn<-,FLStockLen,FLQuant-method
m.spwn<-,FLStockLen,numeric-method
name<-,FLStockLen,character-method
range<-,FLStockLen,numeric-method
stock<-,FLStockLen,FLQuant-method
stock<-,FLStockLen,numeric-method
stock.n<-,FLStockLen,FLQuant-method
stock.n<-,FLStockLen,numeric-method
stock.wt<-,FLStockLen,FLQuant-method
stock.wt<-,FLStockLen,numeric-method
FLStockLen,FLQuant-method
FLStockLen,missing-method
FLStock
FLStock-methods
FLStock
FLStock-class
catch,FLStock-method
catch.n,FLStock-method
catch.wt,FLStock-method
desc,FLStock-method
discards,FLStock-method
discards.n,FLStock-method
discards.wt,FLStock-method
harvest,FLStock-method
harvest.spwn,FLStock-method
landings,FLStock-method
landings.n,FLStock-method
landings.wt,FLStock-method
mat,FLStock-method
m,FLStock-method
m.spwn,FLStock-method
name,FLStock-method
range,FLStock-method
stock,FLStock-method
stock.n,FLStock-method
stock.wt,FLStock-method
catch<-,FLStock,FLQuant-method
catch<-,FLStock,numeric-method
catch<-,FLStock,FLQuants-method
catch.n<-,FLStock,FLQuant-method
catch.n<-,FLStock,numeric-method
catch.wt<-,FLStock,FLQuant-method
catch.wt<-,FLStock,numeric-method
desc<-,FLStock,character-method
discards<-,FLStock,FLQuant-method
discards<-,FLStock,numeric-method
discards.n<-,FLStock,FLQuant-method
discards.n<-,FLStock,numeric-method
discards.wt<-,FLStock,FLQuant-method
discards.wt<-,FLStock,numeric-method
harvest<-,FLStock,character-method
harvest<-,FLStock,FLQuant-method
harvest<-,FLStock,numeric-method
harvest.spwn<-,FLStock,FLQuant-method
harvest.spwn<-,FLStock,numeric-method
landings<-,FLStock,FLQuant-method
landings<-,FLStock,numeric-method
landings.n<-,FLStock,FLQuant-method
landings.n<-,FLStock,numeric-method
landings.wt<-,FLStock,FLQuant-method
landings.wt<-,FLStock,numeric-method
mat<-,FLStock,FLQuant-method
mat<-,FLStock,numeric-method
m<-,FLStock,FLQuant-method
m<-,FLStock,numeric-method
m.spwn<-,FLStock,FLQuant-method
m.spwn<-,FLStock,numeric-method
name<-,FLStock,character-method
range<-,FLStock,numeric-method
stock<-,FLStock,FLQuant-method
stock<-,FLStock,numeric-method
stock.n<-,FLStock,FLQuant-method
stock.n<-,FLStock,numeric-method
stock.wt<-,FLStock,FLQuant-method
stock.wt<-,FLStock,numeric-method
FLStock,FLQuant-method
FLStock,missing-method
FLStock,FLQuants-method
FLStocks
FLStocks-methods
FLStocks
FLStocks-class
FLStocks-methods
FLStocks,ANY-method
FLStocks,missing-method
FLStocks,list-method
FLStocks,FLStock-method
FLStocks,missing-method
FLStocks,list-method
Names of slots of a given class
iter
iter-methods
iter,FLArray-method
iter,FLQuant,ANY-method
iter,FLCohort,ANY-method
iter,vector-method
lattice
lattice-FLCore
xyplot,formula,FLQuant-method
xyplot,formula,FLCohort-method
xyplot,formula,FLQuants-method
xyplot,formula,FLComp-method
bwplot,formula,FLQuant-method
bwplot,formula,FLComp-method
dotplot,formula,FLQuant-method
dotplot,formula,FLComp-method
barchart,formula,FLQuant-method
barchart,formula,FLComp-method
stripplot,formula,FLQuant-method
stripplot,formula,FLComp-method
histogram,formula,FLQuant-method
histogram,formula,FLComp-method
histogram,formula,FLQuants-method
densityplot,formula,FLPar-method
Extract simply-defined metrics from compex objects
msy: A series of methods to extract or compute MSY-based reference points
FLQuant arithmetic operators that extend objects
%+%
%
%+%-methods
%-%
%-%-methods
%^%
%^%-methods
operators
%*%,FLQuant,FLQuant-method
%/%,FLQuant,FLQuant-method
%+%,FLQuant,FLQuant-method
%-%,FLQuant,FLQuant-method
%^%,FLQuant,FLQuant-method
%*%,FLPar,FLQuant-method
%/%,FLPar,FLQuant-method
%+%,FLPar,FLQuant-method
%-%,FLPar,FLQuant-method
%^%,FLPar,FLQuant-method
%*%,FLQuant,FLPar-method
%/%,FLQuant,FLPar-method
%+%,FLQuant,FLPar-method
%-%,FLQuant,FLPar-method
%^%,FLQuant,FLPar-method
%*%,FLPar,FLPar-method
%+%,FLPar,FLPar-method
%-%,FLPar,FLPar-method
%/%,FLPar,FLPar-method
%^%,FLPar,FLPar-method
/,FLQuants,FLPar-method
plot
plot,FLQuant,missing-method
plot,FLQuantPoint,missing-method
plot,FLPar,missing-method
plot,FLStock,missing-method
plot,FLStocks,missing-method
plot,FLStocks,FLPar-method
plot,FLBiol,missing-method
plot,FLCohort,missing-method
plot,FLIndex,missing-method
plot,FLIndices,missing-method
plot,FLSR,missing-method
plot,FLQuant,missing-method
plot,FLStock,missing-method
plot,FLBiol,missing-method
plot,FLIndex,missing-method
plot,FLSR,missing-method
plot,FLPar,missing-method
predictModel
predictModel-methods
predictModel-class
predictModel,FLQuants-method
predictModel,missing-method
SRModels
ricker
ab2sv
bevholt
bevholt.ar1
bevholt.c.a
bevholt.c.b
bevholt.d
bevholt.ndc
bevholt.sv
Bevholt.SV
geomean
logl.ar1
ricker.ar1
ricker.c.a
ricker.c.b
ricker.d
ricker.sv
Ricker.SV
segreg
shepherd
shepherd.ar1
shepherd.d
shepherd.d.ar1
shepherd.ndc
shepherd.ndc.ar1
sv2ab
SRModels
bevholt
SRModels
segreg
SRModels
geomean
SRModels
shepherd
SRModels
cushing
SRModels
rickerSV
SRModels
bevholtSV
SRModels
shepherdSV
SRModels
bevholtAR1
SRModels
rickerAR1
SRModels
segregAR1
SRModels
rickerCa
Calculate or return the Spawning Stock Biomass
summary,FLArray-method
summary,FLQuantPoint-method
summary,FLPar-method
summary,FLComp-method
summary,FLQuants-method
summary,FLQuants-methods
summary,predictModel-method
summary,FLBiol-method
summary,FLModel-method
summary,FLlst-method
summary,FLlst-methods